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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11079356_11080098_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11079356 - 11080098
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCATTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATGATTTAAAA
Flanking Amino Acid:
SSASAVMSGKSSPAKKPGLR
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
80
0.75
1
78.6
31
Major PPT
76.9
0.61
0.8
74.4
34.7
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
50.7
0.02
1.7
61.29
38.3

Associated Gene:

Gene:
MCM3AP
Ensembl Gene ID:
ENSAPLG00000015213
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029100
11058961 - 11084463
25503
ENSAPLT00000015902
11058961 - 11084463
25503