Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11084902_11085239_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11084902 - 11085239

Intron Length:

338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGGAGC

5'SS Class:

major

3'SS Sequence:

TTGTTCTCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTACGAT

U12 Branch Point Sequence:

ATTGCCTGAAGT

Flanking Amino Acid:

LPAAAAAPRTRYLLYDVNPP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

64.2

41.9

Major BPS

0.3

1.4

60.8

45.4

Major PPT

85.4

0.8

77.8

36.7

Minor 5ss

27.6

-2.6

34.8

41.4

Minor BPS

59.8

0.39

1.9

79.25

42.7

Associated Gene:

Gene:

POFUT2

Ensembl Gene ID:

ENSAPLG00000015047

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039177

11083879 - 11092259

8381

ENSAPLT00000015720

11083556 - 11092259

8704