Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11091028_11091201_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11091028 - 11091201

Intron Length:

174

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGAAT

5'SS Class:

major

3'SS Sequence:

CATTTTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

CATTTTTTCACA

Flanking Amino Acid:

VIDQWICAHARYFIGTSVST

Intron Amino Acid Position:

389

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

71.5

39.9

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

84.3

0.77

0.8

79.5

32.2

Minor 5ss

32.6

-2

3.5

47.9

47.8

Minor BPS

57.3

0.22

1.7

67.28

39.8

Associated Gene:

Gene:

POFUT2

Ensembl Gene ID:

ENSAPLG00000015047

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039177

11083879 - 11092259

8381

ENSAPLT00000015720

11083556 - 11092259

8704