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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11112329_11119405_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11112329 - 11119405
Intron Length:
7077

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTCATTAAAT
Flanking Amino Acid:
LYTLNRPLLSGISNAEARQP
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
1
90.6
24.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.9
0.9
0.6
88.2
21.5
Minor 5ss
30.1
-2.3
3.8
42.6
38.5
Minor BPS
70.5
0.72
1.7
86.84
38.4

Associated Gene:

Gene:
ADARB1
Ensembl Gene ID:
ENSAPLG00000015600
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016328
11111218 - 11137518
26301