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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11119588_11127343_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11119588 - 11127343
Intron Length:
7756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTCCCTCCCT
Flanking Amino Acid:
LTMSCSDKIARWNVLGIQGA
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.3
26.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
71.1
0.48
0.7
68.8
24.9
Minor 5ss
32.8
-2
3
40.8
45.7
Minor BPS
43.5
-0.4
3.8
84.58
42.1

Associated Gene:

Gene:
ADARB1
Ensembl Gene ID:
ENSAPLG00000015600
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016328
11111218 - 11137518
26301