Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11183860_11189701_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11183860 - 11189701

Intron Length:

5842

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTGTC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTCAC

U12 Branch Point Sequence:

CTTTTCTCCACA

Flanking Amino Acid:

AGARDRKPPKRHVKAKSEPV

Intron Amino Acid Position:

150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.8

81.4

30.7

Major BPS

77.2

0.68

0.8

77.6

26.2

Major PPT

84.9

0.79

0.7

80.1

25.5

Minor 5ss

43.3

-0.7

3.1

60.6

44.5

Minor BPS

54.4

0.13

70.77

41.8

Associated Gene:

Gene:

FAM207A

Ensembl Gene ID:

ENSAPLG00000015590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016247

11182047 - 11228342

46296