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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11238441_11238791_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11238441 - 11238791
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CTCCCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCAAACTCATCT
Flanking Amino Acid:
VTWVLLLVTMAFTMECPKIK
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
78.6
0.64
0.8
75.7
32.8
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
45.6
-0.2
2
63.24
46.1

Associated Gene:

Gene:
ITGB2
Ensembl Gene ID:
ENSAPLG00000014857
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015534
11238374 - 11245263
6890