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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11239909_11240165_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11239909 - 11240165
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGGGCACCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TCGCCCCTAATA
Flanking Amino Acid:
LESTTPSRRIGFGSFVDKTV
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
56.6
0.15
1
47.2
40.7
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
57.1
0.22
1.7
65.41
41.2

Associated Gene:

Gene:
ITGB2
Ensembl Gene ID:
ENSAPLG00000014857
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015534
11238374 - 11245263
6890