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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11241639_11241758_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11241639 - 11241758
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTGCTCTCCATT
Flanking Amino Acid:
VTSKMVDVYKKLSEMIPKSA
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
73
0.52
1
69.2
35.8
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
47.8
-0
1.9
68.93
42.5

Associated Gene:

Gene:
ITGB2
Ensembl Gene ID:
ENSAPLG00000014857
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015534
11238374 - 11245263
6890