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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11243830_11244168_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11243830 - 11244168
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTTCCCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
TTTTCCCCCACA
Flanking Amino Acid:
FHNGSLCGGTERGQCDCGKC
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.5
42.9
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
82.8
0.74
0.7
77.2
24.9
Minor 5ss
34.8
-1.7
2.9
43.9
43.7
Minor BPS
51.9
0.05
2.3
76.63
40.3

Associated Gene:

Gene:
ITGB2
Ensembl Gene ID:
ENSAPLG00000014857
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015534
11238374 - 11245263
6890