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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11244925_11245197_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11244925 - 11245197
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTCACCTTTATC
Flanking Amino Acid:
KEKSKAKWNEADNPLFKSAT
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
83.3
0.75
0.8
74.5
36.3
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
62.4
0.37
1.7
71.3
40.2

Associated Gene:

Gene:
ITGB2
Ensembl Gene ID:
ENSAPLG00000014857
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015534
11238374 - 11245263
6890