About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11248568_11248927_R


Intron Information:

Intron Rank:
12

Intron Class:
major-like

Intron Phase:
0

Intron Coordinates:
11248568 - 11248927

Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGA|GTTTGTGGC

5'SS Class:
weak_major

3'SS Sequence:
TTTGTACTTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTGTAC

U12 Branch Point Sequence:
TCTCTTTGTACT

Flanking Amino Acid:
QHWKWQKKVRIINRGLFIMG

Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
54
0.09
1.2
49
40.4

Major BPS
61.6
0.29
1.4
63.4
44

Major PPT
84.2
0.77
0.8
78.1
35.3

Minor 5ss
36.8
-1.5
3
41.1
39.4

Minor BPS
48.8
-0
1.8
69.43
41.5

Associated Gene:

Gene:
KMO

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

11248394 - 11260414
12021