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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11249727_11250204_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11249727 - 11250204
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
ATCTTCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GCCTATTTACCT
Flanking Amino Acid:
VPFYGQGMNAGFEDCLVFDE
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
78.2
0.63
0.8
69.8
36
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
49.6
0.05
1.8
64.9
45.7

Associated Gene:

Gene:
KMO
Ensembl Gene ID:
ENSAPLG00000014014
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014618
11248394 - 11260414
12021