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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11251666_11252658_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11251666 - 11252658
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGT|GCCAGGGTT
5'SS Class:
weak_major
3'SS Sequence:
GCCCATACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
AGGCCCATACTT
Flanking Amino Acid:
PPRDGDVSVPVFFLWPLGFF
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.4
70.5
36.7
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
67.2
0.39
0.9
62.2
38.3
Minor 5ss
22.2
-3.2
4.3
39
46.2
Minor BPS
46.5
-0.1
1.9
61.7
42.1

Associated Gene:

Gene:
KMO
Ensembl Gene ID:
ENSAPLG00000014014
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014618
11248394 - 11260414
12021