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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11255006_11255565_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11255006 - 11255565
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGTC
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTTTTCTGAACT
Flanking Amino Acid:
YSIPYGKKNQYILSVDRANL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
72.7
37.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.6
0.82
0.8
81.1
35.9
Minor 5ss
36.2
-1.6
3.5
52.7
44.5
Minor BPS
76.5
0.91
1.3
89.64
34

Associated Gene:

Gene:
KMO
Ensembl Gene ID:
ENSAPLG00000014014
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014618
11248394 - 11260414
12021