About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11256030_11258705_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11256030 - 11258705
Intron Length:
2676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACCAA
U12 Branch Point Sequence:
GTCTGTGTAACC
Flanking Amino Acid:
FHVDVYEAREDIRTSSFARG
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
49.4
-0
1.3
59.1
37.3
Major PPT
80.7
0.69
0.9
76.3
32.2
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
47.1
-0.2
2.3
62.16
43.8

Associated Gene:

Gene:
KMO
Ensembl Gene ID:
ENSAPLG00000014014
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014618
11248394 - 11260414
12021