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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11282855_11285235_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11282855 - 11285235
Intron Length:
2381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATG
Flanking Amino Acid:
SLLETTAETEKVTINSAAEC
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.2
0.59
1
79.3
31.9
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
68.5
0.44
1.6
74.98
37.4

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633