Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11288212_11291988_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11288212 - 11291988

Intron Length:

3777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAACTG

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

ATGTTTCTATCT

Flanking Amino Acid:

LEVQLESSQKIEELNNEIKD

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.8

42.1

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

86.2

0.81

0.8

83.9

31.1

Minor 5ss

34.9

-1.7

3.3

47.4

Minor BPS

1.9

70.19

41.2

Associated Gene:

Gene:

PCNT

Ensembl Gene ID:

ENSAPLG00000013024

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013637

11281234 - 11354866

73633