Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11304_11758_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11304 - 11758

Intron Length:

455

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGCAA

5'SS Class:

major

3'SS Sequence:

TTTAATTCCATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTCATTTAATT

Flanking Amino Acid:

CSEEHLKALQNEVVLSHFFQ

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

68.2

38.4

Major BPS

100

1.24

0.5

100

Major PPT

74.6

0.55

0.8

69.5

36.4

Minor 5ss

29.4

-2.4

3.3

37.9

46.9

Minor BPS

71.2

0.74

1.4

86.41

33.1

Associated Gene:

Gene:

STRADB

Ensembl Gene ID:

ENSAPLG00000014653

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015296

7561 - 14454

6894

ENSAPLT00000048196

7561 - 14454

6894