Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11313794_11316676_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11313794 - 11316676

Intron Length:

2883

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTCT

5'SS Class:

strong_major

3'SS Sequence:

GTCACTAATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

TTCTGTATAATT

Flanking Amino Acid:

LLEQQIAQLKEEFEAEKTAS

Intron Amino Acid Position:

1244

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.2

31.7

Major BPS

77.3

0.68

81.5

Major PPT

65.8

0.36

58.3

Minor 5ss

39.4

-1.2

3.3

56.7

47.6

Minor BPS

53.2

0.18

76.08

41.4

Associated Gene:

Gene:

PCNT

Ensembl Gene ID:

ENSAPLG00000013024

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013637

11281234 - 11354866

73633