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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11319129_11319601_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11319129 - 11319601
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTTAAAT
Flanking Amino Acid:
KAKEKHHLEKLDELLDETLT
Intron Amino Acid Position:
1415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.8
29.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.7
0.76
0.8
81.1
35.6
Minor 5ss
33
-1.9
2.7
39.4
38.9
Minor BPS
69.2
0.68
1.3
80.13
35.2

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633