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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11319814_11321547_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11319814 - 11321547
Intron Length:
1734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TATTGTTCATTT
Flanking Amino Acid:
LELVVESTKELEKRHEIHVQ
Intron Amino Acid Position:
1486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
76.7
27.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.4
0.68
0.8
78.2
35.2
Minor 5ss
39
-1.2
3.1
47.5
42.5
Minor BPS
46.6
-0.1
2.1
68.92
42.7

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633