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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11331712_11332888_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11331712 - 11332888
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTG
5'SS Class:
major
3'SS Sequence:
TCTTTATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
QEALERKEGEIASLLEQLDQ
Intron Amino Acid Position:
1838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.6
40.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.6
0.78
0.7
77.7
35.6
Minor 5ss
47.5
-0.2
2.8
64.6
46.7
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633