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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11333042_11333653_F

Intron Information:

Intron Rank:
30
Intron Class:
major_hybrid
Intron Phase:
0
Intron Coordinates:
11333042 - 11333653
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCGACAGGAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTCTCGACA
Flanking Amino Acid:
QLQLENACLKDLTKLHVKQN
Intron Amino Acid Position:
1889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
48.6
-0
1.7
56
38.7
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
71
0.66
1.5
82.39
32

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633