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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11333822_11334080_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11333822 - 11334080
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
TCCTTTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGCATATTAATA
Flanking Amino Acid:
HELENTLENTVVENQKSEIE
Intron Amino Acid Position:
1945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71
34.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.5
0.66
0.9
79.5
32.5
Minor 5ss
35
-1.7
3
46.1
42.9
Minor BPS
52.8
0.08
1.6
61.55
38.6

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633