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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11335200_11335941_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11335200 - 11335941
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTGTTTTATCT
Flanking Amino Acid:
PVLLSPADILEKDEVMFDSM
Intron Amino Acid Position:
2318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
81.4
31.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.5
0.6
0.8
71
34.1
Minor 5ss
43.6
-0.7
2.6
56.3
42.5
Minor BPS
59.5
0.38
1.7
77.22
39.9

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633