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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11338188_11339825_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11338188 - 11339825
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTCTCTTGTCA
Flanking Amino Acid:
EKEVLSPQLKTVLKMVYEES
Intron Amino Acid Position:
2581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
72
0.55
1
71.8
31.4
Major PPT
83.8
0.76
0.9
84.7
30.2
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
46.9
-0.2
3.5
75.39
35.8

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633