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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11342113_11342584_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11342113 - 11342584
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCAGT
5'SS Class:
major
3'SS Sequence:
TTGAACTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAACT
Flanking Amino Acid:
EEHQREINKFRFELENKEKD
Intron Amino Acid Position:
2786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
69.1
43.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.6
0.62
0.9
73.7
41.3
Minor 5ss
36.1
-1.6
3
49.5
46.5
Minor BPS
65
0.55
1.4
76.98
39.7

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633