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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11346917_11349082_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11346917 - 11349082
Intron Length:
2166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
AGCTCATGTACT
Flanking Amino Acid:
SDLLSPPASQIRSTDDADSV
Intron Amino Acid Position:
3138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
86.6
0.82
0.7
85.4
29.4
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
46.7
-0.1
2.1
65.49
44.1

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633