About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11353162_11354633_F

Intron Information:

Intron Rank:
46
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11353162 - 11354633
Intron Length:
1472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTCTGCATT
5'SS Class:
weak_major
3'SS Sequence:
TCCACAAGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCCTTTTTAAGA
Flanking Amino Acid:
SHWSHNRSVCTSEKSFVPTQ
Intron Amino Acid Position:
3357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.1
0.05
1.3
60.8
43.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
63
0.29
1
58.8
40.8
Minor 5ss
48.7
-0.1
2.6
68.3
37.3
Minor BPS
59.9
0.31
1.6
65.59
41.9

Associated Gene:

Gene:
PCNT
Ensembl Gene ID:
ENSAPLG00000013024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013637
11281234 - 11354866
73633