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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11385545_11401098_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11385545 - 11401098
Intron Length:
15554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTCTCTTACCT
Flanking Amino Acid:
LLARYIPLIQDVHTEAVQAA
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
78.4
0.64
0.9
74.5
35.4
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
71.9
0.77
1.6
88.99
35.6

Associated Gene:

Gene:
DIP2A
Ensembl Gene ID:
ENSAPLG00000011466
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048272
11382736 - 11457229
74494