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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11395590_11401098_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11395590 - 11401098
Intron Length:
5509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTCTCTTACCT
Flanking Amino Acid:
TNSRDERFRSDVHTEAVQAA
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
78.4
0.64
0.9
74.5
35.4
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
71.9
0.77
1.6
88.99
35.6

Associated Gene:

Gene:
DIP2A
Ensembl Gene ID:
ENSAPLG00000011466
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036440
11382736 - 11457229
74494
ENSAPLT00000012187
11382736 - 11457229
74494
ENSAPLT00000036772
11382736 - 11438032
55297