Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11401219_11409089_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11401219 - 11409089

Intron Length:

7871

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCTATT

5'SS Class:

weak_major

3'SS Sequence:

ATTTTAATCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTTATTTTAATC

Flanking Amino Acid:

HSSVETYTPPDTSSASEDEG

Intron Amino Acid Position:

160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.1

83.5

35.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.61

0.9

70.6

38.4

Minor 5ss

61.6

0.39

2.1

77.4

37.4

Minor BPS

67.1

0.52

1.2

71.13

34.1

Associated Gene:

Gene:

DIP2A

Ensembl Gene ID:

ENSAPLG00000011466

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036772

11382736 - 11438032

55297

ENSAPLT00000036440

11382736 - 11457229

74494

ENSAPLT00000012187

11382736 - 11457229

74494

ENSAPLT00000048272

11382736 - 11457229

74494