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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11409336_11414339_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11409336 - 11414339
Intron Length:
5004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TACATTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCATTCTTACAT
Flanking Amino Acid:
LADLMAHTQLDNHSAPPDVT
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
78.9
0.65
0.9
72.6
37.3
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
58
0.33
1.7
73.39
43.4

Associated Gene:

Gene:
DIP2A
Ensembl Gene ID:
ENSAPLG00000011466
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036440
11382736 - 11457229
74494
ENSAPLT00000012187
11382736 - 11457229
74494
ENSAPLT00000048272
11382736 - 11457229
74494
ENSAPLT00000036772
11382736 - 11438032
55297