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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11415732_11417381_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11415732 - 11417381
Intron Length:
1650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TGCCACTTTACT
Flanking Amino Acid:
FVDDFEELLEVQQPDPNQPK
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
67.6
0.44
1.2
75
40
Major PPT
75.2
0.57
0.9
72.8
37.5
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
53.2
0.18
1.9
71.9
44.2

Associated Gene:

Gene:
DIP2A
Ensembl Gene ID:
ENSAPLG00000011466
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036440
11382736 - 11457229
74494
ENSAPLT00000012187
11382736 - 11457229
74494
ENSAPLT00000048272
11382736 - 11457229
74494
ENSAPLT00000036772
11382736 - 11438032
55297