About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11420968_11421372_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11420968 - 11421372
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATCCAG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGTTGTTAAACT
Flanking Amino Acid:
DASAEIAYIEYKTSKEGSTV
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
57.7
42.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
31.8
-2.1
3
38.2
46.7
Minor BPS
57.7
0.32
2.1
80.14
42.2

Associated Gene:

Gene:
DIP2A
Ensembl Gene ID:
ENSAPLG00000011466
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036440
11382736 - 11457229
74494
ENSAPLT00000012187
11382736 - 11457229
74494
ENSAPLT00000048272
11382736 - 11457229
74494
ENSAPLT00000036772
11382736 - 11438032
55297