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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11423642_11425239_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11423642 - 11425239
Intron Length:
1598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
ATGTTTCCAATT
Flanking Amino Acid:
MLIVADGANPWSISSCDAFL
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
82.3
0.73
0.8
81.1
31
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
47.7
-0
1.8
66.52
38.9

Associated Gene:

Gene:
DIP2A
Ensembl Gene ID:
ENSAPLG00000011466
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036440
11382736 - 11457229
74494
ENSAPLT00000012187
11382736 - 11457229
74494
ENSAPLT00000048272
11382736 - 11457229
74494
ENSAPLT00000036772
11382736 - 11438032
55297