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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11433910_11434852_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11433910 - 11434852
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TGTGTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
TGTGTGTGAATA
Flanking Amino Acid:
LLGITKNVFEAIPVTATGVP
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
80
0.68
0.8
77.9
36.6
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
45.9
-0.3
2.2
60.09
40.4

Associated Gene:

Gene:
DIP2A
Ensembl Gene ID:
ENSAPLG00000011466
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036772
11382736 - 11438032
55297
ENSAPLT00000036440
11382736 - 11457229
74494
ENSAPLT00000012187
11382736 - 11457229
74494
ENSAPLT00000048272
11382736 - 11457229
74494