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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11444025_11444503_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11444025 - 11444503
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTCTTACAG
Flanking Amino Acid:
STTGILAGVKMSHAATSALC
Intron Amino Acid Position:
1190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
63.3
37.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.6
0.96
0.6
87.8
22.4
Minor 5ss
35
-1.7
3.6
48.7
47.8
Minor BPS
56.3
0.06
1.8
63.72
44.3

Associated Gene:

Gene:
DIP2A
Ensembl Gene ID:
ENSAPLG00000011466
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036440
11382736 - 11457229
74494
ENSAPLT00000012187
11382736 - 11457229
74494
ENSAPLT00000048272
11382736 - 11457229
74494