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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11450509_11452138_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11450509 - 11452138
Intron Length:
1630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGATT
5'SS Class:
major
3'SS Sequence:
TTTATTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
YVDMRALRHDRVRLVERGSP
Intron Amino Acid Position:
1367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
76
39.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89
0.88
0.7
88.3
28.7
Minor 5ss
36.5
-1.5
3.6
57
47.3
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
DIP2A
Ensembl Gene ID:
ENSAPLG00000011466
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036440
11382736 - 11457229
74494
ENSAPLT00000012187
11382736 - 11457229
74494
ENSAPLT00000048272
11382736 - 11457229
74494