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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11457823_11459370_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11457823 - 11459370
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTCATTCA
5'SS Class:
weak_major
3'SS Sequence:
CTCGCACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCGCAC
U12 Branch Point Sequence:
GCTTCCTGCAGG
Flanking Amino Acid:
IQKKQAHRRLHTGER
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.6
0.11
1.2
57
36.7
Major BPS
49.1
-0
1.3
60.7
37.6
Major PPT
70.2
0.46
0.9
62.3
33.6
Minor 5ss
36.8
-1.5
2.9
42.5
38.5
Minor BPS
45.4
-0.5
2.2
52.65
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019487
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024191
11457808 - 11463311
5504