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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11477715_11478067_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11477715 - 11478067
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTGAA
U12 Branch Point Sequence:
CTTTCTTTTCCT
Flanking Amino Acid:
PHSWLLEVAYAVMNLYEAHH
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
45.7
-0.2
1.4
34.8
43.8
Major PPT
89.5
0.89
0.6
85
22.6
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
45.4
-0.2
3.6
79.44
43

Associated Gene:

Gene:
LSS
Ensembl Gene ID:
ENSAPLG00000010494
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011004
11475322 - 11484487
9166