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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11479823_11480520_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11479823 - 11480520
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
CTGTCCTCACTT
Flanking Amino Acid:
NAYDFLRFTQIPENPPDYQK
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
84.1
0.77
0.8
79.2
32.9
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
54
0.2
1.9
71.61
45.8

Associated Gene:

Gene:
LSS
Ensembl Gene ID:
ENSAPLG00000010494
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011004
11475322 - 11484487
9166