Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11480572_11480719_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11480572 - 11480719

Intron Length:

148

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGTGG

5'SS Class:

major

3'SS Sequence:

TGCCCCTTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAG

U12 Branch Point Sequence:

AATTCAGGAGAA

Flanking Amino Acid:

YQKYYRHMNKGGFPFSTRDC

Intron Amino Acid Position:

362

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.6

0.44

1.1

54.8

44.8

Major BPS

59.4

0.23

1.5

69.4

37.7

Major PPT

79.8

0.67

0.8

76.5

32.1

Minor 5ss

34.4

-1.8

3.5

46.9

48.5

Minor BPS

37.4

-0.9

2.3

51.04

39.4

Associated Gene:

Gene:

LSS

Ensembl Gene ID:

ENSAPLG00000010494

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011004

11475322 - 11484487

9166