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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11483078_11483353_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11483078 - 11483353
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTGTACCTAACC
Flanking Amino Acid:
FACMQYKYCDGVACREVAQA
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
43.8
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
29.2
-2.4
2.5
25.2
36.6
Minor BPS
62.5
0.37
1.9
76.42
39.4

Associated Gene:

Gene:
LSS
Ensembl Gene ID:
ENSAPLG00000010494
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011004
11475322 - 11484487
9166