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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11483525_11483915_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11483525 - 11483915
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTACTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
ATGACACTAAGG
Flanking Amino Acid:
CWALLGLMAVRYPDIDVLER
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
80.1
0.68
0.9
74
36.3
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
42.1
-0.7
2.2
48.69
44.2

Associated Gene:

Gene:
LSS
Ensembl Gene ID:
ENSAPLG00000010494
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011004
11475322 - 11484487
9166