Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11483995_11484210_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11483995 - 11484210

Intron Length:

216

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGGA

5'SS Class:

strong_major

3'SS Sequence:

GTCTGTCTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAC

U12 Branch Point Sequence:

TCACCCACACCA

Flanking Amino Acid:

KQLPNGDWPQENIAGVFNKS

Intron Amino Acid Position:

590

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

74.1

36.6

Major BPS

62.6

0.31

1.2

66.7

39.9

Major PPT

0.58

0.9

72.8

37.5

Minor 5ss

38.1

-1.3

3.1

49.4

46.8

Minor BPS

43.7

-0.4

55.22

Associated Gene:

Gene:

LSS

Ensembl Gene ID:

ENSAPLG00000010494

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011004

11475322 - 11484487

9166