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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11488878_11490745_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11488878 - 11490745
Intron Length:
1868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ACTTCTTCAAGA
Flanking Amino Acid:
SYRPELDHSEELMFHAEIEE
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
82.2
0.72
0.7
80.7
24.5
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
54.6
0.14
1.8
65.52
41.3

Associated Gene:

Gene:
TMEM237
Ensembl Gene ID:
ENSAPLG00000010261
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010693
11488810 - 11495784
6975