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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11492922_11493935_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11492922 - 11493935
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATAGAT
5'SS Class:
major
3'SS Sequence:
TTTGTCCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACTTTTCTAATG
Flanking Amino Acid:
DVALSVHRSFRVIGLFTHGF
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
73.1
31
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.8
0.69
0.9
78.5
35.1
Minor 5ss
26.7
-2.7
3.3
38.1
46.8
Minor BPS
51.6
-0
1.7
57.33
39.2

Associated Gene:

Gene:
TMEM237
Ensembl Gene ID:
ENSAPLG00000010261
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010693
11488810 - 11495784
6975