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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11494060_11494651_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11494060 - 11494651
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CTCATCCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCCTCATCC
Flanking Amino Acid:
PVSKVFVEKNRRFQAADRAE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.3
72.8
38.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.2
0.39
0.9
58.8
37.3
Minor 5ss
38.1
-1.3
3.3
53.7
43.8
Minor BPS
64.5
0.43
1.8
77.44
38.2

Associated Gene:

Gene:
TMEM237
Ensembl Gene ID:
ENSAPLG00000010261
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010693
11488810 - 11495784
6975